URL

https://biocase.smns-bw.org

MySQL

ABCD 2.1

HTML, XSD

All collection data are made available to the public using the BioCASe provider software. Data are transfered from DiversityCollection into a MySQL cache database installed on the Hetzner server. Several MySQL views provide the data for mapping to ABCD within the provider software.

Biocase is setup in Docker.

/var/data/biocase - root folder
/var/data/biocase/config - bps configuration
/var/data/biocase/archive - bps archive files
/var/data/biocase/downloads - bps download files
/var/data/biocase/biocase_media - media and barcode files
/var/data/biocase/resources - openseadragon and logos
/var/data/biocase/database - MySQL database for BPS

Documentation for installation: https://wiki.bgbm.org/bps/index.php/Installation#Installing_BioCASe_from_a_Docker_image

Docker

Compose file

docker-compose.yml

Start: On manager host (hetzner) docker-compose up -d